Abstract #755
Section: Breeding and Genetics
Session: Breeding and Genetics: Application and methods - Dairy II
Format: Oral
Day/Time: Wednesday 3:45 PM–4:00 PM
Location: Panzacola F-4
Session: Breeding and Genetics: Application and methods - Dairy II
Format: Oral
Day/Time: Wednesday 3:45 PM–4:00 PM
Location: Panzacola F-4
# 755
A genomic-wide association study on development of hyperketonemia in periparturient Holstein dairy cows.
Francisco A. Leal Yepes*1, Heather J. Huson1, Sabine Mann2, Jessica A. A. McArt2, Luciano Caixeta1, Thomas R. Overton1, Joseph J. Wakshlag2, Daryl V. Nydam2, 1College of Agriculture and Life Sciences, Cornell University, Ithaca, NY, 2College of Veterinary Medicine, Cornell University, Ithaca, NY.
Key Words: hyperketonemia, SNP, gene
A genomic-wide association study on development of hyperketonemia in periparturient Holstein dairy cows.
Francisco A. Leal Yepes*1, Heather J. Huson1, Sabine Mann2, Jessica A. A. McArt2, Luciano Caixeta1, Thomas R. Overton1, Joseph J. Wakshlag2, Daryl V. Nydam2, 1College of Agriculture and Life Sciences, Cornell University, Ithaca, NY, 2College of Veterinary Medicine, Cornell University, Ithaca, NY.
The objective was to detect cows with elevated postpartum nonesterified fatty acids (NEFA) and β-hydroxybutyrate (BHBA) concentrations, with or without concurrent hyperketonemia, and identify genomic regions associated with development of hyperketonemia in periparturient Holstein cows. The study population consisted of cows from 2 different trials: In the first study, 63 cows (parity ≥2) were enrolled and blood was collected from 3 to 16 d in milk. In the second study, 84 cows (parity ≥2) were enrolled and sampled from −21 d to +21 d relative to calving. Blood samples were tested for NEFA and BHBA concentration. Hyperketonemia was defined as a BHBA concentration ≥1.2 mmol/L. All BHBA and NEFA measurements were grouped using incremental area under the curve (AUC) to identify individuals with the most variation. Holstein cows were genotyped on the Illumina Bovine High-density (777K) Beadchip. Quality control filtering produced (n = 522,231) single-nucleotide polymorphism (SNP). A genomic wide association study was performed to establish correlation between low frequency SNP (<5%) and development of hyperketonemia using Golden Helix software. The linear regression R2 = 0.21 suggested a low strength correlation between BHBA AUC and NEFA AUC concentration. Although a small sample size, given that these cows were managed under similar conditions, multiple SNP associated with high concentrations of BHBA were found (Table 1). These results might improve genetic selection criteria to identify high-risk animals and develop preventative measures to decrease hyperketonemia development.
Table 1.Regions and candidate genes associated with development of hyperketonemia
Index | Chr. | Region start (bp) | Region end (bp) | −Log10 (P-value) | Genes |
1 | 2 | 12,122,028 | 12,128,393 | 5.086193951 | RRAGA |
2 | 2 | 104,958,840 | 104,958,840 | 5.410113588 | PECR; IGFBP2 and IGFBP5 |
3 | 3 | 93,634,769 | 93,634,769 | 5.031371132 | LRP8; CPT2 and SCP2 |
6 | 21 | 14,153,070 | 14,153,070 | 5.111968697 | CHD2 |
7 | 21 | 16,112,290 | 17,017,717 | 6.451923226 | SV2B |
Key Words: hyperketonemia, SNP, gene